A Zhou , Z He , AM Redding-Johanson , A Mukhopadhyay , CL Hemme , MP Joachimiak , F Luo , Y Deng, KS Bender , Q He , JD Keasling , DA Stahl , MW Fields, TC Hazen , AP Arkin , JD Wall , J Zhou Hydrogen peroxide-induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough 2010 Environ Microbiol (epub)
J. Ito, C. J. Petzold, A. Mukhopadhyay, J. Heazlewood J The role of proteomics in the development of cellulosic biofuels 2010 Current Proteomics (accepted)
M. J. Dunlop, J. D. Keasling, A. Mukhopadhyay* A Model for Improving Microbial Biofuel Production using a Synthetic Feedback Loop 2010 Systems and Synthetic Biology. (Link)
Y. Cong , M. Baker , J. Jakana , D. Woolford , E. Miller , S. Reissmann , R. Kumar , A. Redding-Johanson , T. Batth , A. Mukhopadhyay, S. Ludtke , J. Frydman , W. Chiu . 4.0 Å Resolution Cryo-EM Structure of the Mammalian Chaperonin TRiC/CCT Reveals its Unique Subunit Arrangement. 2010 PNAS. (Link)
B. J. Rutherford, R. Dahl, R. Price, H. L. Szmidt, P. I. Benke, A. Mukhopadhyay*, and J. D. Keasling. Functional Genomic Study of Exogenous n-Butanol Stress in Escherichia coli. Appl Environ Microbiol. 2010 Jan 29. [Epub ahead of print]
Z. He, A. Zhou, E. Baidoo, Q. He, M. P. Joachimiak, P. Benke, R. Phan, A. Mukhopadhyay, C. L. Hemme, K. Huang, E.J. Alm, M.W. Fields, J. Wall, D. Stahl, T.C Hazen, J.D. Keasling, A. P. Arkin, J. Zhou. Global transcriptional, physiological and metabolite analyses of Desulfovibrio vulgaris Hildenborough responses to salt adaptation. Appl Environ Microbiol. 2009 Dec 28. [Epub ahead of print]
M. Ouellet, P. D Adams, J. D Keasling and A. Mukhopadhyay. A Rapid and Inexpensive Labeling Method for Microarray Gene Expression Analysis. BMC Biotechnology 2009 (Link)
A. Shaikh, Y. J. Tang, A. Mukhopadhyay, H. García Martín, J. Gin, P. I. Benke, J. D. Keasling. Study of stationary phase metabolism via isotopomer analysis of amino acids from an isolated protein. Biotechnology Progress 2009 Nov 6 [Epub ahead of print]
D.E Elias, A. Mukhopadhyay, M. Joachimiak, A. M. Redding,H-C. B. Yen, M. W. Fields, T. C. Hazen , A. P. Arkin, J. D Keasling, J. D. Wall. Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation. Nucleic Acids Research 2009(Link)
S. Borglin, D.C. Joyner,J. S. Jacobsen, A. Mukhopadhyay, T.C. Hazen. Overcoming the anaerobic hurdle in phenotypic microarrays: Generation and visualization of growth curve data for Desulfovibrio vulgaris Hildenborough. J Microbiol Methods. 2009 Feb;76(2):159-68 (Link)
J.L Fortman, S. Chhabra, A. Mukhopadhyay,H. Chou, T.S. Lee, E. Steen, J.D. Keasling. Biofuel alternatives to ethanol: pumping the microbial well. Trends Biotechnol. 2008 Jul;26(7):375-81 (Link)
A. Mukhopadhyay, A.M. Redding, B.J. Rutherford, J.D. Keasling. Importance of systems biology in engineering microbes for biofuel production. Curr Opin Biotechnol. 2008 Jun;19(3):228-34 (Link)
S. P. Gaucher, A. M. Redding, A. Mukhopadhyay, J. D. Keasling, A. K. Singh. Post-translational Modifications of Desulfovibrio vulgaris Hildenborough Sulfate Reduction Pathway Proteins, Journal of Proteomic Research 2008 (Link)
A. S. Shaikh, Y. J. Tang, A. Mukhopadhyay, J. D. Keasling Isotopomer Distributions in Amino Acids from a Highly Expressed Protein as a Proxy for Those from Total Protein Analytical Chem 2008(Link)
A. Mukhopadhyay, A. M. Redding, M. P. Joachimiak, A. P. Arkin, S. E. Borglin, P. S. Dehal, R. Chakraborty, J. T. Geller, T. C. Hazen, Q. He, D. C. Joyner, V. J. J. Martin, J. D. Wall, Z-K. Yang, J. Zhou, J. D. Keasling Cell wide responses to low oxygen exposure in Desulfovibrio vulgaris Hildenborough 2007(Link)
Y. Tang, F. Pingitore, A. Mukhopadhyay, R. Phan, T. C. Hazen, J. D. Keasling Pathway confirmation and flux analysis of central metabolic pathways in Desulfovibrio vulgaris Hildenborough using GC-MS and FT-ICR mass spectrometry J. Bacteriol. 2007(Link)
A. Mukhopadhyay, Z. He, E. J. Alm, A. P. Arkin, E. E. Baidoo, S. C. Borglin, W. Chen, T. C. Hazen, Q. He, H-Y. Holman, K. Huang, R. Huang, D. C. Joyner, N. Katz, M. Keller, P. Oeller, A. Redding, J. Sun, J. Wall, J. Wei, Z. Yang, H-C. Yen, J. Zhou, J. D. Keasling Salt Stress in Desulfovibrio vulgaris Hildenborough: an Integrated Genomics Approach J. Bacteriol. 2006 188: 4068-4078 (Link)
A. M. Redding, A. Mukhopadhyay, D. C. Joyner, T. C. Hazen, J. D. Keasling Study of nitrate stress in Desulfovibrio vulgaris Hildenborough using iTRAQ proteomics Brief Funct Genomic Proteomic 2006, 5(2):133-143 (Link)
R. Gao, A. Mukhopadhyay, F. Fang, D. G. Lynn Constitutive Activation of Two-Component Response Regulators: Characterization of VirG Activation in Agrobacterium tumefaciens. J Bacteriol 2006, 188(14):5204-5211 (Link)
A. Mukhopadhyay, R. Gao, D. G. Lynn Integrating Input from Multiple Signals: The VirA/VirG Two-Component System of Agrobacterium tumefaciens. ChemBioChem 2004 5, 1535-1542 (Link)
Y. Wang, A. Mukhopadhyay, V. R. Howitz, A. N. Binns, D. G. Lynn Construction of an efficient expression system for Agrobacterium tumefaciens based on the coliphage T5 promoter. Gene 2000, 242:105-114 (Link)
